#!/bin/bash
set -o errexit -o pipefail
if [[ ${target_platform} =~ linux.* ]] || [[ ${target_platform} == win-32 ]] || [[ ${target_platform} == win-64 ]] || [[ ${target_platform} == osx-64 ]]; then
  export DISABLE_AUTOBREW=1
  ${R} CMD INSTALL --build .
else
  mkdir -p "${PREFIX}"/lib/R/library/biomartr
  mv ./* "${PREFIX}"/lib/R/library/biomartr
  if [[ ${target_platform} == osx-64 ]]; then
    pushd "${PREFIX}"
      for libdir in lib/R/lib lib/R/modules lib/R/library lib/R/bin/exec sysroot/usr/lib; do
        pushd "${libdir}" || exit 1
          while IFS= read -r -d '' SHARED_LIB
          do
            echo "fixing SHARED_LIB ${SHARED_LIB}"
            install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5.0-MRO/Resources/lib/libR.dylib "${PREFIX}"/lib/R/lib/libR.dylib "${SHARED_LIB}" || true
            install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libR.dylib "${PREFIX}"/lib/R/lib/libR.dylib "${SHARED_LIB}" || true
            install_name_tool -change /usr/local/clang4/lib/libomp.dylib "${PREFIX}"/lib/libomp.dylib "${SHARED_LIB}" || true
            install_name_tool -change /usr/local/gfortran/lib/libgfortran.3.dylib "${PREFIX}"/lib/libgfortran.3.dylib "${SHARED_LIB}" || true
            install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib "${PREFIX}"/lib/libquadmath.0.dylib "${SHARED_LIB}" || true
            install_name_tool -change /usr/local/gfortran/lib/libquadmath.0.dylib "${PREFIX}"/lib/libquadmath.0.dylib "${SHARED_LIB}" || true
            install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib "${PREFIX}"/lib/libgfortran.3.dylib "${SHARED_LIB}" || true
            install_name_tool -change /usr/lib/libgcc_s.1.dylib "${PREFIX}"/lib/libgcc_s.1.dylib "${SHARED_LIB}" || true
            install_name_tool -change /usr/lib/libiconv.2.dylib "${PREFIX}"/sysroot/usr/lib/libiconv.2.dylib "${SHARED_LIB}" || true
            install_name_tool -change /usr/lib/libncurses.5.4.dylib "${PREFIX}"/sysroot/usr/lib/libncurses.5.4.dylib "${SHARED_LIB}" || true
            install_name_tool -change /usr/lib/libicucore.A.dylib "${PREFIX}"/sysroot/usr/lib/libicucore.A.dylib "${SHARED_LIB}" || true
            install_name_tool -change /usr/lib/libexpat.1.dylib "${PREFIX}"/lib/libexpat.1.dylib "${SHARED_LIB}" || true
            install_name_tool -change /usr/lib/libcurl.4.dylib "${PREFIX}"/lib/libcurl.4.dylib "${SHARED_LIB}" || true
            install_name_tool -change /usr/lib/libc++.1.dylib "${PREFIX}"/lib/libc++.1.dylib "${SHARED_LIB}" || true
            install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libc++.1.dylib "${PREFIX}"/lib/libc++.1.dylib "${SHARED_LIB}" || true
          done <   <(find . \( -type f -iname "*.dylib" -or -iname "*.so" -or -iname "R" \) -print0)
        popd
      done
    popd
  fi
fi
